As I turned the corner into fall, the air filled with whispers of apple orchards and the promise of homemade treats. There’s something magical about cozying up to a warm, fragrant muffin that wraps you in a comfort blanket of flavor. These Mini Gluten-Free Vegan Apple Muffins are just the solution for those chilly afternoons or busy mornings when you need a satisfying snack. Not only are they quick to prepare, but they embody everything we love about fall—soft apples, aromatic spices, and a delightful cinnamon-sugar topping. Guilt-free yet indulgent, these muffins are perfect for everyone, from the littlest taste testers to adults craving something special. Ready to fill your kitchen with warmth and sweetness? Let’s dive into this deliciously simple recipe!

Why Are These Muffins So Special?
Uniqueness: These mini gluten-free vegan apple muffins are a delightful twist on classic recipes, perfect for fall enthusiasts.
Quick Prep: Whip them up in no time—ideal for busy mornings or unexpected guests.
Guilt-Free Treat: With just 81 calories each, they satisfy your cravings without the guilt!
Versatility: Swap apples for pears or berries to keep things exciting or add nuts for a crunchy contrast.
Warm Spices: Filled with warm spices like cinnamon and nutmeg, these muffins truly embody the essence of the season.
Family Favorite: Loved by kids and adults alike, they make for an excellent school snack or cozy accompaniment to apple cider.
Whether you’re enjoying them fresh out of the oven or as a make-ahead snack, you’ll find that they fit right into your lifestyle. For more delicious ideas, check out my guide on healthy baking alternatives.
Mini Gluten-Free Vegan Apple Muffin Ingredients
For the Muffins
• Coconut Oil – Adds moisture and richness; feel free to substitute with neutral oil if needed.
• Unsweetened Dairy-Free Milk – Provides liquid and moisture; almond milk or oat milk can be great alternatives.
• Unsweetened Applesauce – Acts as a natural sweetener and keeps the muffins moist; can be replaced with more dairy-free milk.
• Vanilla Extract – Enhances flavor; opt for pure extract for the best results.
• Gluten-Free Flour Blend – Creates the muffin’s structure; be sure to use a blend rather than single flour for optimum results.
• Baking Powder – Helps the muffins rise to perfection.
• Salt – Enhances overall flavor.
• Organic Cane Sugar – Adds a touch of sweetness; consider coconut sugar for a healthier option.
• Ground Cinnamon, Nutmeg, Ginger, Cardamom – Infuses warm, fall-inspired spice flavors throughout the muffins.
• Diced Apples – Adds lovely texture and natural sweetness; use firm, sweet apples like Gala, diced small for even cooking.
For the Cinnamon Sugar Coating
• Coconut Oil – Used to help the topping adhere; melting it gives that sweet, crisp finish.
• Cane Sugar – Sweetens the coating; can substitute with coconut sugar for a healthier touch.
• Cinnamon – Adds delightful flavor to the topping; feel free to adjust to your taste preference.
These Mini Gluten-Free Vegan Apple Muffins are not only gluten-free and vegan, but they also bring in the warmth of spices and the sweetness of apples, perfect for cozying up in fall!
Step‑by‑Step Instructions for Mini Gluten-Free Vegan Apple Muffins
Step 1: Preheat Your Oven
Begin by preheating your oven to 350°F (177°C). Prepare a mini muffin pan by greasing it lightly with coconut oil or lining it with mini muffin liners. This step is crucial for ensuring that your mini gluten-free vegan apple muffins bake evenly and come out easily after baking.
Step 2: Mix Wet Ingredients
In a small bowl, combine 1/4 cup melted coconut oil, 1/2 cup unsweetened dairy-free milk, 1/2 cup unsweetened applesauce, and 1 teaspoon pure vanilla extract. Whisk these ingredients together until smooth, creating a delightful mixture that merges moisture and flavor. Set this bowl aside as you move on to the dry ingredients.
Step 3: Combine Dry Ingredients
In a larger mixing bowl, whisk together 1 1/2 cups gluten-free flour blend, 1 tablespoon baking powder, 1/4 teaspoon salt, 1/3 cup organic cane sugar, and 1 teaspoon of each spice: ground cinnamon, nutmeg, ginger, and cardamom. This blend of dry ingredients will create the flavorful base for your mini gluten-free vegan apple muffins, ensuring they’re packed with warm, inviting tastes.
Step 4: Fold in Ingredients
Pour the wet mixture into the bowl of dry ingredients and gently stir until just combined. Be careful not to overmix; a few lumps are perfectly fine. Next, fold in 1 cup of diced apples, ensuring they’re evenly distributed throughout the batter. This step adds texture and sweetness while preventing the apples from breaking down too much.
Step 5: Fill the Muffin Cups
Evenly divide the batter among the wells of your prepared mini muffin pan, filling each cup about 2/3 full. This ensures enough space for the muffins to rise without overflowing. You should see chunks of apple peek through the batter, promising delightful bites in each mini gluten-free vegan apple muffin.
Step 6: Bake to Perfection
Place your filled muffin pan in the preheated oven and bake for 9-11 minutes. Keep an eye on them; the muffins are done when a toothpick inserted into the center comes out clean, signaling fluffy goodness has been achieved. The tops will look slightly golden, hinting at the deliciousness within.
Step 7: Cool and Set
Once baked, remove the muffins from the oven and let them cool in the pan for about 10 minutes. This resting time allows the muffins to firm up slightly before transferring them to a wire rack. Gently remove each muffin and let them cool completely, which enhances their texture and flavor.
Step 8: Add Cinnamon Sugar Coating
While the muffins are cooling, melt an additional tablespoon of coconut oil in a small bowl. In another bowl, mix 1/4 cup cane sugar with 1 teaspoon of ground cinnamon. Once the muffins are cooled, dip the tops in the melted coconut oil and roll them in the cinnamon sugar mixture, adding an irresistible sweet finish to your mini gluten-free vegan apple muffins.

Expert Tips for Mini Gluten-Free Vegan Apple Muffins
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Choose the Right Flour: Using a gluten-free flour blend specifically designed for baking will ensure your muffins come out fluffy, avoiding a dense texture.
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Small Apple Chunks: Dicing the apples into small pieces helps them cook evenly throughout the muffins and ensures maximum flavor in each bite.
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Avoid Overmixing: Mixing the batter until just combined will keep your muffins light and airy. Overmixing can lead to a tough texture.
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Cool Time: Don’t skip letting the muffins cool in the pan for 10 minutes before transferring them; this helps them set properly.
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Storage Tips: Store leftover mini gluten-free vegan apple muffins in an airtight container in the refrigerator for 2-3 days to maintain their freshness and taste.
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Experiment with Spices: Feel free to adjust the warm spices according to your preference. A little extra cinnamon or even some pumpkin spice can enhance flavor.
How to Store and Freeze Mini Gluten-Free Vegan Apple Muffins
Fridge: Keep leftover muffins in an airtight container in the refrigerator for up to 3 days to maintain their freshness.
Freezer: For longer storage, freeze the muffins in a single layer, then transfer to a freezer-safe bag or container. They can be frozen for up to 3 months.
Reheating: To enjoy, simply thaw the muffins overnight in the fridge and reheat in the microwave for 15-20 seconds or until warmed through.
Make-Ahead Tip: These mini gluten-free vegan apple muffins can be made ahead of time and frozen, allowing you to have a cozy treat ready whenever you’re craving something sweet!
What to Serve with Mini Gluten-Free Vegan Apple Muffins
As the rich aroma of baked apple muffins fills the air, you might wonder what to pair with these delightful bites for a complete cozy experience.
- Warm Apple Cider: Adds a comforting sweetness and enhances the apple flavor. Perfect for sipping alongside the muffins.
- Chai Tea: Spiced and aromatic, chai tea complements the warm spices in the muffins while providing a soothing contrast.
- Coconut Yogurt: Creamy and rich, this yogurt adds a luscious texture and is excellent topped with a sprinkle of cinnamon.
- Caramelized Nuts: A crunchy counterpart to soft muffins, try maple-glazed walnuts or pecans for a delightful twist on flavors.
- Fresh Fruit Salad: A vibrant mix of seasonal fruits offers a refreshing, healthy boost to your snack time. Sliced pears and berries enhance the cozy feel!
- Pumpkin Spice Latte: This beloved autumn drink pairs beautifully with the flavors of fall inherent in the muffins. Sip and savor!
- Maple Syrup Drizzle: A touch of maple syrup over the muffins provides added sweetness and a delicious glaze, turning them into an indulgent treat.
Each pairing enriches the experience, transforming your simple muffins into a cherished moment, perfect for friends, family, or your own cozy afternoon.
Make Ahead Options
These mini gluten-free vegan apple muffins are perfect for those busy days when you want to save time without compromising on flavor! You can prepare the batter up to 24 hours in advance; simply mix the wet and dry ingredients together, but hold off on adding the diced apples until right before baking to keep them fresh. Alternatively, you can bake the muffins and store them in an airtight container for up to 3 days in the refrigerator. To serve, warm them slightly in the microwave or oven; they’ll still be just as delicious, fluffy, and aromatic as the day they were baked!
Mini Gluten-Free Vegan Apple Muffin Variations
Feel free to explore your creativity in the kitchen and customize these delightful muffins to suit your taste!
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Fruity Twist: Replace apples with pears or berries for a fresh flavor adventure. Each bite will bring a new surprise!
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Nutty Crunch: Add chopped walnuts or pecans to the batter for an earthy crunch. The contrast with the soft muffins will make every mouthful delightful.
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Choco-Lover: Mix in dairy-free chocolate chips for a sweet touch! These muffins can easily become a decadent treat with just a handful of chips added.
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Pumpkin Spice: Swap the spices with pumpkin spice for a cozy, autumn-inspired twist. Experience that warm, fall feeling in every bite.
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Coconut Delight: Incorporate shredded coconut into the batter for added texture and sweetness. It will transport you straight to tropical bliss!
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Savory Infusion: Add a pinch of sea salt to the cinnamon sugar for a sweet-and-salty experience. It’s a simple yet effective twist that elevates the flavor profile.
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Fruity Glaze: Drizzle a simple glaze made of powdered sugar and lemon juice over cooled muffins for a tangy finish. It’s a sweet surprise that brightens the flavors!
For more delicious inspiration, check out my guide on healthy baking alternatives or explore some creative ideas for seasonal recipes.

Mini Gluten-Free Vegan Apple Muffins Recipe FAQs
How do I choose the best apples for this recipe?
Absolutely! For the best flavor and texture, opt for firm, sweet apples like Gala, Honeycrisp, or Fuji. The key is to select apples that are not overly ripe; look for apples with no dark spots or bruises. Dicing them small ensures they cook evenly in the muffins, giving you delightful bites of sweetness in every mouthful.
What’s the best way to store leftover muffins?
Very! Store any leftovers in an airtight container in the refrigerator. They’ll stay fresh for about 2 to 3 days. If you notice they’re getting a bit dry, try popping them in the microwave for a few seconds before enjoying them again. This will help restore some moisture and softness!
Can I freeze these muffins for later?
Absolutely! Freezing is a great option if you want to save some for a future treat. To freeze, first let the muffins cool completely. Then, place them in a single layer on a baking sheet and freeze for about 1-2 hours until firm. After that, transfer them to a freezer-safe bag or container, ensuring to squeeze out as much air as possible. They can be stored for up to 3 months!
Can I modify the ingredients for allergies?
Of course! This recipe is very flexible. If you have nut allergies, feel free to substitute the dairy-free milk with oat milk or any other nut-free alternative. You can also switch out the coconut oil with a different neutral oil if there are sensitivities. Just make sure that the gluten-free flour blend you choose is safe for your dietary needs.
Why do my muffins come out dense?
Very good question! If your muffins are dense, it’s often due to overmixing the batter. Make sure to mix the wet and dry ingredients until just combined; a few lumps are perfectly okay! Also, ensure that your gluten-free flour blend is appropriate for baking—using the wrong type can lead to a heavy texture. I recommend using a quality blend specifically designed for muffins or cakes, like Bob’s Red Mill Gluten-Free All-Purpose Baking Flour.
How can I enhance the flavor of my muffins?
Definitely! You can experiment with different spices such as adding a bit more cinnamon, or including pumpkin spice for a cozy twist. Another way to boost flavor is by adding a pinch of salt to the cinnamon-sugar coating; it really enhances that sweet-salty contrast. You might also consider mixing in some toasted nuts or dark chocolate chips for an extra touch of warmth and flavor!

Sweet Mini Gluten-Free Vegan Apple Muffins for Cozy Moments
Ingredients
Equipment
Method
- Preheat your oven to 350°F (177°C). Prepare a mini muffin pan by greasing it lightly with coconut oil or lining it with mini muffin liners.
- In a small bowl, combine 1/4 cup melted coconut oil, 1/2 cup unsweetened dairy-free milk, 1/2 cup unsweetened applesauce, and 1 teaspoon pure vanilla extract. Whisk together until smooth.
- In a larger mixing bowl, whisk together 1 1/2 cups gluten-free flour blend, 1 tablespoon baking powder, 1/4 teaspoon salt, 1/3 cup organic cane sugar, and 1 teaspoon each of ground cinnamon, nutmeg, ginger, and cardamom.
- Pour the wet mixture into the bowl of dry ingredients and gently stir until just combined, then fold in 1 cup of diced apples.
- Evenly divide the batter among the wells of the prepared mini muffin pan, filling each cup about 2/3 full.
- Bake for 9-11 minutes or until a toothpick inserted in the center comes out clean.
- Allow the muffins to cool in the pan for about 10 minutes before transferring them to a wire rack.
- Melt an additional tablespoon of coconut oil in a small bowl. In another bowl, mix 1/4 cup cane sugar with 1 teaspoon of ground cinnamon. Dip the tops of cooled muffins in melted coconut oil and roll in the cinnamon-sugar mixture.

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